FootPrinter 3.0 Web server
You need help adjusting the parameters of FootPrinter? Please read the
FootPrinter2.0 paper
, or look at the
manual
.
Questions?
Ask the FootPrinter Master...
Paste
input sequences
(Fasta format)
(See this
example
)
Or Upload a
sequence file
in Fasta Format:
Sequence type
Upstream sequences
Downstream sequences
Other
Paste your
phylogenetic tree
(
Optional
if all your species are in the
default tree)
(See this
small example
, or
the full tree
)
Or Upload a
tree file:
Motif size
6
7
8
9
10
11
12
Maximum number of mutations
0
1
2
3
4
5
6
Maximum mutations per branch
1
2
Allow alignment guide?
Yes (ignore next two options)
No
Subregion change cost
0
0.5
1
1.5
2
Subregions size
20
50
100
200
500
1000
Allow regulatory element losses?
No (ignore next two options)
Yes
Spanned tree significance level
Somewhat significant
Significant
Very significant
Motif loss cost
0.5
1
1.5
2
Press
to submit information, or
to clear fields.
